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Dep. of Land Resources and Environ. Sci., Montana State Univ., Bozeman, MT 59717 USA
binskeep{at}montana.edu
| ABSTRACT |
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Abbreviations: bp, base pair DGGE, denaturing gradient gel electrophoresis EC, electrical conductivity PCR, polymerase chain reaction redox potential, EH
| INTRODUCTION |
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Microbial reduction of As(V) to As(III) may occur through a process thought to be a detoxification mechanism or via dissimilatory reduction (respiration). Arsenic detoxification has been documented in Escherichia coli, Staphylococcus aureus, and Staphylococcus xylosis, and is controlled by ars genes that encode for As(V) reduction via an As(V) reductase, followed by As(III) removal from the cell with an efflux pump (Tamaki and Frankenberger, 1992; Cervantes et al., 1994). Dissimilatory reduction has been documented in several environmental isolates capable of coupling C oxidation with As(V) reduction (Ahmann et al., 1994; Laverman et al., 1995; Macy et al., 1996; Newman et al., 1997; Blum et al., 1998). Dissimilatory As(V) reduction rates with these isolates have been found to be as high as 10 mM d-1 at an initial As(V) concentration of 5 mM (Laverman et al., 1995). However, little is known about rates of microbial reduction in natural systems where As(V) is generally not a dominant electron acceptor and where As(V) reducers may represent only a fraction of the microbial community. Furthermore, it is unknown whether detoxification mechanisms represent an important microbially mediated pathway for As(V) reduction in soil systems.
The bioavailability and behavior of As in natural systems is strongly influenced by sorption to solid surfaces such as oxides of Mn, Al, and Fe. Detailed spectroscopic studies (x-ray absorption fine structure spectroscopy) have shown that both As(V) and As(III) sorb to Fe oxides via inner-sphere surface complexation (Waychunas et al., 1995; Fendorf et al., 1997; Manning et al., 1998). Past work demonstrates that As(III) does not sorb as strongly as As(V) at low As surface coverage (Pierce and Moore, 1982), while more recent work shows that As(III) sorbs more strongly than As(V) at higher As surface coverage (Manning et al., 1998; Raven et al., 1998; Sun and Doner, 1998). Because of differences in relative sorption strengths of As(III) and As(V), changes in soil EH have been found to alter aqueous As concentrations. For example, decreased soil EH during flooding generally increases aqueous As concentrations initially (Masscheleyn et al., 1991a; Onken and Hossner, 1995; McGeehan et al., 1998), while extended flooding may decrease aqueous As concentrations because of sorption of As(III) or precipitation of As-sulfide solid phases (Rittle et al., 1995). Although it is expected that reductive dissolution of Fe oxide phases plays an important role in the solubilization of As under reducing conditions, it is unclear whether sorption of As(V) limits the rate of As(V) reduction, because of lower bioavailability of sorbed phase As. Substrate bioavailability is often limited by sorption in situations where rates of desorption-diffusion reactions are lower than rates of substrate utilization.
In summary, mechanisms controlling rates of microbially mediated As(V)/As(III) cycling in soils and natural waters are poorly defined. We have initiated studies on As redox cycling with the overall goal to enhance predictability of As behavior in nature. The specific objectives of the current study were to (i) assess the effects of microbial growth, As enrichment, and As(V) concentration on microbial reduction rates of aqueous As(V), (ii) determine the influence of Fe oxides on reduction rates of aqueous and sorbed phase As(V), and (iii) evaluate the effect of reducing conditions on aqueous As concentrations in the presence of Fe oxides.
| Materials and methods |
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Denaturing gradient gel electrophoresis (DGGE) was used to characterize microbial populations present in the original C3-NI soil, CN-0, and CN-8. Total sample DNA was extracted by mixing 0.4 g of autoclaved acid-washed glass beads and 0.8 mL of Na-phosphate buffer (120 mM, pH = 8.0) with either 0.4 g soil or 0.4 mL of a microbial cell suspension for 45 s with a Mini-Bead Beater (BioSpec Products, Bartlesville, OK). All other methods were as outlined by More et al. (1994). Briefly, after NH4-acetate precipitation, the DNA was further purified by isopropanol-precipitation (1 h at 4°C) and centrifugation (13 000 x g) for 15 min. The resulting DNA pellet was washed with 70% (v/v) ethanol (-20°C), dried (65°C), and then resuspended in TRIS-EDTA buffer. Polymerase chain reaction (PCR) amplification of the 1070- to 1392-bp region of the 16S rRNA gene (Escherichia coli nucleotide map numbers) was achieved with the following two primers (sequences): 1070 forward (5'-ATG GCT GTC GTC AGC T-3') and 1392 reverse with GC clamp (5'-CGC CCG CCG CGC CCC GCG CCC GGC CCG CCG CCC CCG CCC CAC GGG-3'). The reaction mix consisted of Assay Buffer B (Fisher Scientific, Pittsburgh, PA), 2.5 mM MgCl2, bovine serum albumin (Fisher Scientific), 0.2 mM of each dNTP, 0.5 mM of each primer, 1 mL DNA sample, 1.25 units Taq polymerase (Fisher Scientific), and deionized H2O to bring final volume to 50 mL. The amplification was conducted with a Perkin Elmer Applied Biosystems (Foster City, CA) Gene-Amp 9700 Thermal Cycler (one cycle of 45 s at 94°C; 35 cycles of 1 min at 94°C, 45 s at 55°C, and 45 s at 70°C; and one cycle at 72°C for 7 min).
A DCode Universal Mutation Detection System (Bio-Rad, Hercules, CA) was used to resolve the PCR-amplified 16S rDNA fragments in an 8% (w/v) acrylamide gel containing a 35 to 80% (v/v) gradient of a urea-formamide solution comprised of 7 M urea/40% (v/v) formamide. The DGGE conditions were 80 V for 16 h at 60°C, with a running buffer comprised of 40 mM Tris, 20 mM acetic acid, 2 mM EDTA at pH 8.5. The DGGE gels were photographed with UV transillumination. For CN-8 only, the 1070- to 1392-bp region of the 16S rDNA gene was sequenced and the results compared with sequences contained in both the RDP database (Maidak et al., 1997) and GenBank (Benson et al., 1997).
Reduction Rates of Aqueous As(V)
Experiments designed to determine rates of As(V) reduction in the presence of CN-0 or CN-8 were conducted in serum bottles (70 mL) containing 50 mL of AR broth. The bottles were capped with butyl rubber septa, crimp-sealed, and purged with N2(g) (10 min at approximately 60 mL min-1). The bottles were subsequently acidified with 0.15 mL of 6 M HCl to attain a pH of 6.5, then sterilized by autoclaving. The bottles were aseptically inoculated with CN-0 or CN-8 to attain an initial cell density of 106 cells mL-1, as determined by an empirically developed relationship between cell enumeration on YEPG (yeast extract, peptone, glucose) agar and optical density of cell suspensions at 500 nm (A500). Experiments were conducted over a range of initial As(V) concentrations (6 µM5 mM as Na2HAsO4) at a constant concentration of total C (30 mM) added as glucose. In a separate experiment with 300 µM As(V), As(V) reduction rates were verified to not be limited by glucose concentrations ranging from 10 to 100 mM as C (results not shown). Serum bottles were agitated on a horizontal shaker (120 cycles min-1) at 25°C, and aseptically sampled as a function of time. At each sampling time, microbial numbers were estimated by measuring optical density (A500), and a duplicate sample was filtered (0.22 µm) for analysis of As(V), As(III), and dissolved organic C (described below). Reduction rates of aqueous As(V) were determined by performing linear regressions between As(V) concentration and time for the initial linear phase of As(V) reduction curves.
The fate of glucose-C in the 0.6, 2, and 5 mM As treatments with CN-8 was evaluated by spiking each serum bottle with 14C-glucose to an initial specific activity of 1.7 x 102 Bq mL-1. Both filtered (0.2 µm) and unfiltered samples were acidified with concentrated HCl (1% v/v) and purged of CO2 prior to 14C analysis. Oxidized C was calculated as the difference in C between an initial sample (t = 0) and each unfiltered, purged sample. The difference between filtered and unfiltered samples was assumed to equal biomass C.
Reduction Rates of As(V) in Presence of Fe Oxides
Microbial As(V) reduction rates in the presence of Fe oxides were evaluated and compared with reduction rates of aqueous As(V). A CN-0 population, described above, was used as an inoculum source in these experiments. Goethite and 2-line ferrihydrite were prepared by the methods of Schwertmann and Cornell (1991). The ferrihydrite suspension was washed with deionized H2O until NO-3 was not detectable (with ion chromatography); goethite was dialyzed until the electrical conductivity (EC) in the goethite suspension equaled the EC of deionized H2O. The suspensions were lyophilized, and ground with mortar and pestle to pass a 125-µm sieve. The identities of the solid phases were confirmed with x-ray diffraction, and surface areas were determined with three-point N2(g)-BET analysis yielding values of 25 m2 g-1 and 363 m2 g-1 for goethite and ferrihydrite, respectively. A batch sorption isotherm experiment with As(V) and As(III) was conducted with 2-line ferrihydrite to select an As(V) loading level for the reduction experiments. Suspensions of ferrihydrite (25 mM as Fe) were treated with a range of initial As(V) and As(III) concentrations (0, 0.03, 0.1, 0.3, 1, 3, 10, and 30 mM) made from Na2HAsO4·7H2O and NaAsO2 salts, respectively, in the following pH 6 nutrient solution: NH4NO3 (2.5 mM), MgCl2 (2 mM), CaSO4 (4 mM), KH2PO4 (5 mM), KOH (0.5 mM), NaOH (2.5 mM), HNO3 (3.5 mM), H2SO4 (1 mM), and micronutrients (as above). Suspensions were purged with N2(g), shaken for 96 h on a horizontal shaker (72 cycles min-1), and filtrates (0.2 µm) analyzed for As (described below). Equilibration time was determined by conducting a kinetic sorption study at 1 mM As(V).
As(V) reduction experiments were conducted for both goethite (at 100 mM As/2.5 mM Fe and 13.4 mM As/25 mM Fe) and ferrihydrite (300 mM As/25 mM Fe). Experiments were conducted in a controlled EH/pH chamber (2.4-L capacity) that was fitted with air-tight ports for combination pH and platinum (Pt) redox electrodes, a fritted glass nebulizer, and a gas outlet (modified from Patrick et al., 1973). During periods of active microbial growth, the controller (Model 05656-05, Cole Parmer, Vernon Hills, IL) could maintain the solution EH to within approximately ±25 mV by sparging the solution with 99% O2(g)/1% CO2(g) and/or 99% N2(g)/1% CO2(g) (certified by Air Liquide, La Porte, TX). CO2(g) was included to imitate a typical soil environment. The redox electrodes were initially tested in ferrous-ferric and quinhydrone reference solutions (ASTM, 1993), and recalibrated periodically during the experiments. The difference between the measured potential and the hydrogen electrode potential in quinhydrone reference solution (pH 6.86) was added to each measured potential to obtain EH values. Initially, the Fe oxide, As(V), and nutrient solution mixture (described above) was continually stirred and sparged with 99% O2(g)/1% CO2(g) for 2 to 4 d to obtain equilibrium with respect to solution and sorbed phase As concentrations. Each mixture was subsequently inoculated with a CN-0 cell suspension and sparged for an additional 24 h with the O2(g)/CO2(g) mixture prior to reducing EH by sparging with 99% N2 (g)/1% CO2 (g). Glucose was added as a non-specific electron donor at rates ranging from 2.3 to 5.2 mmol C d-1, adjusted periodically to attain the required experimental redox potential. The solution pH was held constant by delivering small aliquots of HCl (0.13 M) or KOH (0.11 M) either manually or with a Dosimat 655 pH controller (Brinkmann Instruments, Inc., Westbury, NY). Samples were filtered (0.2 µm) for determination of As(T), As(V), As(III), S(-II), Cl-, SO2-4, NO-3, PO3-4, alkalinity, EC, Fe, and cations (described below).
Analytical Techniques
Aqueous As was analyzed with continuous flow hydride generation atomic absorption spectrophotometry (HGAAS) by acidifying samples to 3 M HCl, pre-reducing any As(V) in 1% (w/v) KI, and mixing with 0.6% (w/v) NaBH4/0.5% (w/v) NaOH in a reaction coil. Flow rates were 7 and 1 mL min-1 for sample and NaBH4 reagent, respectively, and generated arsine was quantified in an air-acetylene flame at 193.7 nm. The average measured concentration of a 0.267 µM EPA certified standard (Spex Certiprep, Inc., Metuchen, NJ) was 0.268 ± 0.025 µM (n = 69). As(V) and As(III) were determined for the solution studies using the following method modified from Masscheleyn et al. (1991b). Five milliliters of filtered sample were added to 1 mL of 2 M TRIS buffer (pH 6.0). While sparging the buffered solution with N2(g), 1 mL of 3% NaBH4/0.1% NaOH was added incrementally (0.2 mL over 15 s, 3 min wait, 0.8 mL over 45 s, 3 min wait) to liberate arsine from any As(III) in the sample. Samples for As determination were preserved in 1% concentrated HCl until analyzed. The original sample, As(T), and the speciated sample, As(V), were both analyzed for As with HGAAS, and the As(III) concentration was calculated by difference. Analysis of standards made from NaAsO2 and Na2 HAsO4·7H2O salts yielded recoveries of 93 ± 10% (n = 7) and 110 ± 5% (n = 8) for As(III) and As(V), respectively. Quantification of As(III) and As(V) in the solid phase experiments was similar to the above procedure except 0.5 mL of both TRIS and NaBH4 were used, yielding As(III) and As(V) recoveries of 94 ± 14% (n = 17) and 110 ± 16% (n = 18), respectively.
Dissolved organic carbon (DOC) was analyzed with a DC-80 carbon analyzer (Tekmar-Dohrmann, Cincinnati, OH); cations and S by inductively coupled plasma spectrometry (ICP); and Cl-, NO-3, SO2-4, and PO3-4 by ion chromatography (IC). Total alkalinity was measured by HCl titration to an inflection point near pH 4.5. Titrated samples were then sparged with N2(g) for more than 15 min, titrated to the original pH with NaOH, and retitrated to the inflection pH with HCl in order to calculate carbonate alkalinity. Fe was analyzed with the phenanthroline method and S(-II) was determined by either iodometric titration (only for the high As:Fe goethite experiment) or the methylene blue method (APHA, 1989). Ion activities and saturation indices for Fe and As sulfide phases were calculated by the aqueous chemical equilibrium model, MINTEQ (Alison et al., 1991). Samples generated in experiments to determine the fate of 14C -glucose with CN-8 were analyzed for 14C using liquid scintillation (Model 2200CA, Packard Instr., Meriden, CT). Fermentation products were identified via GC-mass spectroscopy with a Model 5890 Series II+ gas chromatograph (Hewlett Packard Co., Santa Clara, CA), a Stable Wax column (Resteck Corp., Bellefonte, PA), and a Model VG70E double focusing mass spectrometer (VG Mass-lab, Thermo Instrument Systems, Hurst, TX). Aliphatic organic acids were quantified by ion chromatography (Dionex, Sunnyvale, CA; AS6-ICE column; 0.5 mL min-1 flow rate; mobile phase 80% 0.4 mM aqueous heptafluorobutyric acid and 20% acetonitrile; AMMS-2 suppressor) in combination with 14C-radioisotope detection (Radiomatic 500TR Series, Packard Instr.,) and suppressed electrical conductivity detection. Gas partial pressures in serum bottle headspaces were determined with a Carle (Tulsa, OK) Series 100 gas chromatograph and total headspace pressures were measured with a pressure transducer (Tensimeter, Soil Measurement Systems, Las Cruces, NM). Headspace gas volumes were calculated from the gas partial pressure, the total headspace pressure, and the total headspace volume. Moles of headspace gas were calculated with the ideal gas law.
| Results and discussion |
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1 d).
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Additional independent measurements demonstrated that CN-8 was fermenting glucose and was not oxidizing a significant amount of C via respiration. Analysis of C end products by ion chromatography and GC-MS found that the total dissolved organic C remaining after growth of CN-8 was approximately 21 mM C (=0.67 initial C) and was composed primarily of butyric acid (
6 mM as C), with lower concentrations of acetic acid, formic acid, butanol, and sec-butyl butyrate (1-methylpropyl butanoate). Furthermore, H2(g) was the only significant reduced gaseous product found in serum bottle headspaces (up to 0.11 atm [11 kPa]), and the amount of evolved H2(g) was found to equal approximately the amount of evolved CO2(g) on the basis of 14C analyses. These observations are consistent with the stoichiometry of a fermentation pathway yielding butyric acid and H2 as reduced species (Brock et al., 1994).
DGGE analysis was used to assess the complexity of the As(V)-reducing population in the enriched culture. The organism referred to above as CN-8 was isolated from a dilution extinction of the seventh serial transfer. This organism exhibited a single band in DGGE analysis (results not shown) and cultured as a single colony type on AR agar. The DGGE profile and colony morphology of CN-8 did not change after two subcultures. These observations are consistent with the conclusion that CN-8 was a pure culture. The 1070- to 1392-bp region of the 16S gene of this isolate was amplified by PCR and sequenced. Comparison of the CN-8 sequence against those contained in public databases suggested its closest relative (98% identity) to be Clostridium intestinalis (Benson et al., 1997; Maidak et al., 1997), a strict anaerobe known to ferment glucose. The genotypic data classifying CN-8 as Clostridium is in agreement with the phenotypic characterization that showed that CN-8 is a Gram positive, spore-forming obligate anaerobe, that ferments glucose to butyrate and H2. These are defining features for Clostridium (Willis, 1990).
Comparison of As(V) reduced by CN-0 and CN-8 as a function of optical density suggests that CN-8 was not a numerically dominant member of the total microbial community (Fig. 2) . For example, CN-0 growth had a substantially smaller effect on the extent of As(V) reduction than growth of CN-8. It is also noteworthy that the majority of As(V) reduced in the presence of CN-0 occurred after optical densities (A500) stabilized near 0.7. Conversely, the percentage of As(V) reduced by CN-8 was positively correlated (r2 = 0.95) to optical density (A500) when all data from 6 to 600 µM As were grouped (n = 36), and little As(V) reduction occurred after growth ceased. However, CN-8 growth rates were independent of initial As(V) concentration from 6 to 600 µM As, and as judged by final optical density measurements at As(V) concentrations up to 5 mM, As(V) concentration had little apparent effect on growth yield. These results show that As(V) was not required for CN-8 growth, nor did the presence of As(V) enhance the growth rate of CN-8. The fact that total CN-8 growth yield was independent of both the amount of initial As(V) and the total As(V) reduced suggests that As(V) reduction did not occur via respiration, and perhaps occurred via an alternate mechanism such as detoxification (Tamaki and Frankenberger, 1992; Cervantes et al., 1994).
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Significantly lower H2(g) production by CN-0 (0.015 atm [1.5 kPa]) than by the CN-8 isolate (0.11 atm [11 kPa]) suggests substantial qualitative differences in metabolic functions between cultures. This is not a surprising outcome given that CN-0 suspensions were mixed populations extracted from the C3-NI soil. Also, As(V) reduction kinetics were quite different between CN-0 and CN-8 (Fig. 1), with the majority of As(V) reduction in CN-0 occurring after net growth had ceased. The latter observation suggests that either a subset of the CN-0 population coupled As(V) reduction with organic acid oxidation following initial fermentation of glucose, or that substantial detoxification occurred during the stationary phase of growth in the CN-0 culture. We are currently continuing attempts to address As(V) reduction mechanisms in mixed cultures, and to determine the potential importance of CN-8, and similar organisms, in soils.
Effect of As(V) Concentration on As(V) Reduction Rate
The effects of initial As(V) concentration on rates of As(V) reduction (M d-1) were evaluated in more detail for both CN-0 and CN-8 (Fig. 3)
. Rates of As(V) reduction with CN-0 were lower than CN-8 by approximately 2 fold at 6 µM As and 10 fold at 600 µM As, despite similar growth rates for CN-0 and CN-8 (Fig. 1). As discussed above, differences in reduction rates were consistent with differences in microbial populations between CN-0 and CN-8. Reduction rates for CN-8 reached a maximum of 1 mM d-1 at initial As(V) concentrations above 600 µM As(V); these rates are approximately 5 to 10 fold lower than rates of dissimilatory As(V) reduction previously reported for strains MIT-13 (Ahmann et al., 1994) and SES-3 (Laverman et al., 1995). The difference in As(V) reduction mechanisms between CN-8 (detoxification) and isolates MIT-13 and SES-3 (respiration) may explain the differences in observed rates of As(V) reduction.
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0.97) and resulted in consistent values of k1 (0.0290.039 h-1 mM C-1) across As concentrations spanning two orders of magnitude (Table 1)
. Increases in biomass C were described with a growth model that was first order with respect to C, and fitted curves for biomass C and As(V) reduction agreed well with measured data (Fig. 4)
. In summary, the As(V) reduction rate during the growth phase of CN-8 was first order with respect to both As(V) concentration and microbial biomass.
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To evaluate As(V) reduction in a system dominated by sorbed, rather than aqueous As, an experiment was conducted in a goethite suspension with a low As:Fe ratio (5.3 x 10-4 mol mol-1). Initial aqueous As concentrations represented only 0.5% of total As, yet increased seven fold over 25 d as Pt EH decreased from 500 to -100 mV (Fig. 6)
. The increase in aqueous As concentration (measured predominantly as As(III)) was likely due to weaker sorption of As(III) than As(V) on Fe oxides at low As:Fe molar ratios (Pierce and Moore, 1982). Rates of As solubilization averaged 0.01 mM d-1, considerably slower than the minimum observed reduction rate of aqueous As(V) (12 mM d-1). The significantly lower rates of As solubilization as compared with reduction rates of As(V) in solution suggest that reactions responsible for desorption of As(V) controlled rates of formation of aqueous As(III). Reductive dissolution of goethite could have accounted for a portion of the increase in aqueous As concentrations. However, aqueous Fe concentrations did not increase as redox potential decreased and were near the detection limit of 1 µM (
0.004% of total Fe) for most of the experiment. This finding is in agreement with evidence that low surface area and the formation of surface coatings significantly inhibit goethite reduction rates (Roden and Zachara, 1996). Therefore, the 7-fold increase in total aqueous As concentrations was likely due to differences in As sorption between As(V) and As(III), rather than reductive dissolution of goethite.
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The reduction of As(V) to As(III) in each of our studies could be caused by either microbial reduction or via abiotic reduction. For example, S(II), Fe(II), H2(g), and reduced organic acids could each reduce As(V) to As(III) based on thermodynamic equilibrium. However, abiotic As(V) reduction has been shown to be substantially slower than microbially mediated reduction (Ahmann et al., 1997; Newman et al., 1997). Therefore, the rates of As(V) reduction in our studies are believed to be controlled directly by microbial processes rather than by abiotic reduction.
| Conclusions |
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600 µM. At initial As(V) concentrations greater than 600 µM, reduction rates of aqueous As(V) reached a maximum of approximately 1 mM d-1. We also showed that CN-8, whose closest RDP relative was Clostridium intestinalis, fermented glucose and produced butyric acid and H2(g) as the dominant reduced species. Microbial growth rates were independent of initial As(V) concentration or the mass of As(V) reduced, suggesting that CN-8 was not reducing As(V) via respiration, and may have employed a detoxification pathway similar to that described in studies using E. coli, S. aureus, and S. xylosus. We are continuing efforts to investigate the potential role of detoxification pathways in As cycling in soils and natural water systems. In incubations containing CN-0, the effects of microbial growth on the solubilization of total As in the presence of Fe oxide phases depended in part on As surface coverage, and on the surface area or crystallinity of the Fe oxide phase. Microbial reduction rates of aqueous As(V) were not affected by goethite, but solubilization of As was highly dependent on the As:Fe ratio due to the relative dependence of As(V) and As(III) sorption strengths on As surface coverage. The net rate of As desorption from ferrihydrite during reduction was found to be approximately 100-fold higher than from goethite at similar aqueous As concentrations. This was due, at least in part, to differences in reductive dissolution rates between solid phases. Based on our findings, rates of As mobilization in reducing environments are controlled by rates of As desorption, or more directly, rates of reductive dissolution of the oxide phase.American Society for Testing and Materials 1993
| ACKNOWLEDGMENTS |
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Received for publication April 30, 1999.
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